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RCSB PDB - jCEjFATCAT Structure Alignment Server V. 2.11 - All vs All Protein Structure Comparison and Alignment

CE and FATCAT are methods for calculating pairwise structure alignments. They align two polypeptide chains using characteristics of their local geometry as defined by vectors between C alpha positions. This site provide access to the Java implementation of these algorithms, called jCE and jFATCAT, as part of the Protein Comparison Tool.

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TITLE

RCSB PDB - jCEjFATCAT Structure Alignment Server V. 2.11 - All vs All Protein Structure Comparison and Alignment

DESCRIPTION

CE and FATCAT are methods for calculating pairwise structure alignments. They align two polypeptide chains using characteristics of their local geometry as defined by vectors between C alpha positions. This site provide access to the Java implementation of these algorithms, called jCE and jFATCAT, as part of the Protein Comparison Tool.

CONTENT

This web site states the following, "RCSB PDB - jCEjFATCAT Structure Alignment Server V." Our analyzers noticed that the web page stated " All vs All Protein Structure Comparison and Alignment." The Website also said "org server gives you access to the developmental version of jCE and jFATCAT. You can launch a pairwise alignment of the latest development code from below. Specify what PDB chains to be aligned from here. JCE algorithm - Java Web Start. JFatCat - Java Web Start rigid. JFatCat - Java Web Start flexible. 3D alignment based on Smith Waterman." The website's header had CE FATCAT jCE jFATCAT structure alignment structure comparison RCSB PDB Protein Comparison Tool as the most important optimized keyword.

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